IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_smRNA.nwk -s All_Species_m2_smRNA.nexus --scf 100 --prefix concord_smRNA -T 2
Seed:    409906 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:56:33 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_smRNA.nexus ... Nexus format detected
Alignment has 26 sequences with 135 columns, 129 distinct patterns
135 parsimony-informative, 0 singleton sites, 0 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  TA -> ActMar__TA
AldGig  TA -> AldGig__TA
ApaSpi  CG -> ApaSpi__CG
BatTri  NN -> BatTri__NN
CarIns  CG -> CarIns__CG
CheAbi  TA -> CheAbi__TA
CheMyd  CA -> CheMyd__CA
CheSer  CA -> CheSer__CA
ChrPic  TA -> ChrPic__TA
CuoAmb  TA -> CuoAmb__TA
CuoMcc  TA -> CuoMcc__TA
DerCor  CA -> DerCor__CA
DerMaw  CA -> DerMaw__CA
EmyOrb  NN -> EmyOrb__NN
EmySub  CG -> EmySub__CG
GopAga  TA -> GopAga__TA
MalTer  TA -> MalTer__TA
MauRee  TA -> MauRee__TA
MesTub  TG -> MesTub__TG
PelCas  CG -> PelCas__CG
PelSin  CG -> PelSin__CG
PlaMeg  TA -> PlaMeg__TA
PodExp  CG -> PodExp__CG
SteCar  CA -> SteCar__CA
TerCar  TA -> TerCar__TA
TraScr  TA -> TraScr__TA

            Gap/Ambiguity  Composition  p-value
   1  ActMar__TA    1.48%    passed     93.21%
   2  AldGig__TA    0.74%    passed     73.13%
   3  ApaSpi__CG    3.70%    passed     77.37%
   4  BatTri__NN   42.22%    passed     78.51%
   5  CarIns__CG    5.19%    passed     93.21%
   6  CheAbi__TA    5.19%    passed     86.04%
   7  CheMyd__CA    0.00%    passed     43.69%
   8  CheSer__CA    3.70%    passed     91.82%
   9  ChrPic__TA    0.00%    passed     94.46%
  10  CuoAmb__TA    1.48%    passed     89.28%
  11  CuoMcc__TA    0.00%    passed     93.11%
  12  DerCor__CA    0.74%    passed     67.05%
  13  DerMaw__CA    3.70%    passed     77.26%
  14  EmyOrb__NN   46.67%    passed     63.72%
  15  EmySub__CG    3.70%    passed     18.21%
  16  GopAga__TA    0.74%    passed     93.67%
  17  MalTer__TA    5.19%    passed     66.94%
  18  MauRee__TA    1.48%    passed     70.65%
  19  MesTub__TG    2.22%    passed     61.46%
  20  PelCas__CG    3.70%    passed     65.05%
  21  PelSin__CG    1.48%    passed     85.95%
  22  PlaMeg__TA    0.00%    passed     96.65%
  23  PodExp__CG   14.81%    passed     54.53%
  24  SteCar__CA    1.48%    passed     80.73%
  25  TerCar__TA    2.22%    passed     95.35%
  26  TraScr__TA    1.48%    passed     84.70%
****  TOTAL         5.90%  0 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_smRNA.nwk ...
un-rooted tree with 26 taxa and 47 branches
Computing site concordance factor...
ERROR: computeSiteConcordance only work with bifurcating tree
